chr11:1887776:T>C Detail (hg38) (LSP1)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr11:1,909,006-1,909,006 View the variant detail on this assembly version. |
| hg38 | chr11:1,887,776-1,887,776 |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | NM_002339.2:c.*13+200T>C | |
| NM_001242932.1:c.*13+200T>C | ||
| NM_001013253.1:c.*13+200T>C |
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.154 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.162 | Malignant neoplasm of breast | Six of the previously identified SNPs showed a statistically significant associa... | BeFree | 22867275 | Detail |
| 0.166 | Malignant neoplasm of breast | Six of the previously identified SNPs showed a statistically significant associa... | BeFree | 22867275 | Detail |
| 0.031 | breast carcinoma | Six of the previously identified SNPs showed a statistically significant associa... | BeFree | 22867275 | Detail |
| 0.010 | breast carcinoma | Six of the previously identified SNPs showed a statistically significant associa... | BeFree | 22867275 | Detail |
| 0.004 | breast carcinoma | Six of the previously identified SNPs showed a statistically significant associa... | BeFree | 22867275 | Detail |
| 0.006 | breast carcinoma | Six of the previously identified SNPs showed a statistically significant associa... | BeFree | 22867275 | Detail |
| <0.001 | Mammographic Density | Among the premenopausal women, three SNPs (rs12443621 [TNRc9/LOC643714], rs38171... | BeFree | 18681954 | Detail |
| 0.170 | Malignant neoplasm of breast | Six of the previously identified SNPs showed a statistically significant associa... | BeFree | 22867275 | Detail |
| 0.121 | Mammographic Density | Among the premenopausal women, three SNPs (rs12443621 [TNRc9/LOC643714], rs38171... | BeFree | 18681954 | Detail |
| 0.230 | Malignant neoplasm of breast | Six of the previously identified SNPs showed a statistically significant associa... | BeFree | 22867275 | Detail |
| <0.001 | breast carcinoma | We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662... | BeFree | 21791674 | Detail |
| 0.132 | Malignant neoplasm of breast | We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662... | BeFree | 21791674 | Detail |
| 0.001 | breast carcinoma | We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662... | BeFree | 21791674 | Detail |
| 0.001 | Malignant neoplasm of breast | We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662... | BeFree | 21791674 | Detail |
| 0.003 | breast carcinoma | We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662... | BeFree | 21791674 | Detail |
| 0.123 | Malignant neoplasm of breast | We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662... | BeFree | 21791674 | Detail |
| 0.162 | Malignant neoplasm of breast | Consistent with their breast cancer associations, rs3817198 (LSP1) and rs1328161... | BeFree | 20145138 | Detail |
| 0.004 | breast carcinoma | Consistent with their breast cancer associations, rs3817198 (LSP1) and rs1328161... | BeFree | 20145138 | Detail |
| 0.049 | Malignant neoplasm of breast | Consistent with their breast cancer associations, rs3817198 (LSP1) and rs1328161... | BeFree | 20145138 | Detail |
| 0.166 | Malignant neoplasm of breast | Consistent with their breast cancer associations, rs3817198 (LSP1) and rs1328161... | BeFree | 20145138 | Detail |
| 0.006 | breast carcinoma | Consistent with their breast cancer associations, rs3817198 (LSP1) and rs1328161... | BeFree | 20145138 | Detail |
| 0.009 | breast carcinoma | Consistent with their breast cancer associations, rs3817198 (LSP1) and rs1328161... | BeFree | 20145138 | Detail |
| 0.162 | Malignant neoplasm of breast | Three SNPs (LSP1-rs3817198, COL1A1-rs2075555, and RNF146-rs2180341) did not show... | BeFree | 21791674 | Detail |
| 0.123 | Malignant neoplasm of breast | Three SNPs (LSP1-rs3817198, COL1A1-rs2075555, and RNF146-rs2180341) did not show... | BeFree | 21791674 | Detail |
| 0.004 | breast carcinoma | Three SNPs (LSP1-rs3817198, COL1A1-rs2075555, and RNF146-rs2180341) did not show... | BeFree | 21791674 | Detail |
| <0.001 | breast carcinoma | Three SNPs (LSP1-rs3817198, COL1A1-rs2075555, and RNF146-rs2180341) did not show... | BeFree | 21791674 | Detail |
| 0.121 | Mammographic Density | Evidence of association with MD was found for variant rs3803662 (TOX3) (Odds Rat... | BeFree | 23021931 | Detail |
| <0.001 | Mammographic Density | Evidence of association with MD was found for variant rs3803662 (TOX3) (Odds Rat... | BeFree | 23021931 | Detail |
| 0.004 | breast carcinoma | In conclusion, we show that there is little overlap between the breast cancer ri... | BeFree | 25611573 | Detail |
| 0.010 | breast carcinoma | In conclusion, we show that there is little overlap between the breast cancer ri... | BeFree | 25611573 | Detail |
| 0.162 | Malignant neoplasm of breast | In conclusion, we show that there is little overlap between the breast cancer ri... | BeFree | 25611573 | Detail |
| 0.170 | Malignant neoplasm of breast | In conclusion, we show that there is little overlap between the breast cancer ri... | BeFree | 25611573 | Detail |
| 0.120 | Malignant neoplasm of breast | Large-scale genotyping identifies 41 new loci associated with breast cancer risk... | GWASCAT | 23535729 | Detail |
| <0.001 | Carcinoma of lung | Our findings demonstrate a novel pleiotropic association between the breast canc... | BeFree | 24681604 | Detail |
| 0.004 | breast carcinoma | Our findings demonstrate a novel pleiotropic association between the breast canc... | BeFree | 24681604 | Detail |
| 0.162 | Malignant neoplasm of breast | Our findings demonstrate a novel pleiotropic association between the breast canc... | BeFree | 24681604 | Detail |
| 0.162 | Malignant neoplasm of breast | Large-scale genotyping identifies 41 new loci associated with breast cancer risk... | GWASCAT | 23535729 | Detail |
| 0.080 | breast carcinoma | There was significant association between LSP1 rs3817198T>C polymorphism and ... | BeFree | 21127985 | Detail |
| 0.121 | Mammographic Density | Genome-wide association study identifies multiple loci associated with both mamm... | GWASCAT | 25342443 | Detail |
| 0.162 | Malignant neoplasm of breast | Association of a LSP1 gene rs3817198T>C polymorphism with breast cancer risk:... | BeFree | 21127985 | Detail |
| <0.001 | Malignant neoplasm of lung | Our findings demonstrate a novel pleiotropic association between the breast canc... | BeFree | 24681604 | Detail |
| 0.480 | Malignant neoplasm of breast | There was significant association between LSP1 rs3817198T>C polymorphism and ... | BeFree | 21127985 | Detail |
| 0.004 | breast carcinoma | Association of a LSP1 gene rs3817198T>C polymorphism with breast cancer risk:... | BeFree | 21127985 | Detail |
| 0.120 | Mammographic Density | Genome-wide association study identifies multiple loci associated with both mamm... | GWASCAT | 25342443 | Detail |
| 0.080 | breast carcinoma | There was significant association between LSP1 rs3817198T>C polymorphism and ... | BeFree | 21127985 | Detail |
| 0.120 | Malignant neoplasm of breast | Genome-wide association study identifies novel breast cancer susceptibility loci... | GWASCAT | 17529967 | Detail |
| 0.360 | Malignant neoplasm of breast | There was significant association between LSP1 rs3817198T>C polymorphism and ... | BeFree | 21127985 | Detail |
| 0.162 | Malignant neoplasm of breast | Genome-wide association study identifies novel breast cancer susceptibility loci... | GWASCAT | 17529967 | Detail |
| 0.006 | breast carcinoma | Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... | BeFree | 22532573 | Detail |
| 0.131 | Malignant neoplasm of breast | We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... | BeFree | 23893088 | Detail |
| 0.031 | breast carcinoma | We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... | BeFree | 23893088 | Detail |
| 0.009 | breast carcinoma | Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... | BeFree | 22532573 | Detail |
| 0.031 | breast carcinoma | Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... | BeFree | 22532573 | Detail |
| 0.001 | Malignant neoplasm of breast | Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... | BeFree | 22532573 | Detail |
| 0.162 | Malignant neoplasm of breast | Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... | BeFree | 22532573 | Detail |
| 0.002 | breast carcinoma | Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... | BeFree | 22532573 | Detail |
| 0.001 | breast carcinoma | Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... | BeFree | 22532573 | Detail |
| 0.162 | Malignant neoplasm of breast | We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... | BeFree | 23893088 | Detail |
| 0.002 | breast carcinoma | We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... | BeFree | 23893088 | Detail |
| 0.004 | breast carcinoma | Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... | BeFree | 22532573 | Detail |
| 0.170 | Malignant neoplasm of breast | We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... | BeFree | 23893088 | Detail |
| 0.131 | Malignant neoplasm of breast | Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... | BeFree | 22532573 | Detail |
| 0.230 | Malignant neoplasm of breast | We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... | BeFree | 23893088 | Detail |
| <0.001 | breast carcinoma | We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... | BeFree | 23893088 | Detail |
| 0.049 | Malignant neoplasm of breast | Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... | BeFree | 22532573 | Detail |
| 0.166 | Malignant neoplasm of breast | Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... | BeFree | 22532573 | Detail |
| 0.128 | Malignant neoplasm of breast | We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... | BeFree | 23893088 | Detail |
| 0.090 | Malignant neoplasm of breast | Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... | BeFree | 22532573 | Detail |
| 0.004 | breast carcinoma | We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... | BeFree | 23893088 | Detail |
| 0.019 | breast carcinoma | Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... | BeFree | 22532573 | Detail |
| 0.230 | Malignant neoplasm of breast | Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2),... | BeFree | 22532573 | Detail |
| 0.010 | breast carcinoma | We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941... | BeFree | 23893088 | Detail |
| <0.001 | Lymphoma, Non-Hodgkin | In the pleiotropy analysis, six risk variants for other cancers were associated ... | BeFree | 24598796 | Detail |
| 0.003 | Lymphoma, Non-Hodgkin | In the pleiotropy analysis, six risk variants for other cancers were associated ... | BeFree | 24598796 | Detail |
| <0.001 | Lymphoma, Non-Hodgkin | In the pleiotropy analysis, six risk variants for other cancers were associated ... | BeFree | 24598796 | Detail |
| <0.001 | Lymphoma, Large-Cell, Follicular | In the pleiotropy analysis, six risk variants for other cancers were associated ... | BeFree | 24598796 | Detail |
| <0.001 | Lymphoma, Large-Cell, Follicular | In the pleiotropy analysis, six risk variants for other cancers were associated ... | BeFree | 24598796 | Detail |
| <0.001 | Lymphoma, Large-Cell, Follicular | In the pleiotropy analysis, six risk variants for other cancers were associated ... | BeFree | 24598796 | Detail |
| <0.001 | Lymphoma, Non-Hodgkin | In the pleiotropy analysis, six risk variants for other cancers were associated ... | BeFree | 24598796 | Detail |
| <0.001 | Lymphoma, Large-Cell, Follicular | In the pleiotropy analysis, six risk variants for other cancers were associated ... | BeFree | 24598796 | Detail |
| <0.001 | Lymphoma, Large-Cell, Follicular | In the pleiotropy analysis, six risk variants for other cancers were associated ... | BeFree | 24598796 | Detail |
| <0.001 | Lymphoma, Non-Hodgkin | In the pleiotropy analysis, six risk variants for other cancers were associated ... | BeFree | 24598796 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Six of the previously identified SNPs showed a statistically significant association with breast can... | DisGeNET | Detail |
| Six of the previously identified SNPs showed a statistically significant association with breast can... | DisGeNET | Detail |
| Six of the previously identified SNPs showed a statistically significant association with breast can... | DisGeNET | Detail |
| Six of the previously identified SNPs showed a statistically significant association with breast can... | DisGeNET | Detail |
| Six of the previously identified SNPs showed a statistically significant association with breast can... | DisGeNET | Detail |
| Six of the previously identified SNPs showed a statistically significant association with breast can... | DisGeNET | Detail |
| Among the premenopausal women, three SNPs (rs12443621 [TNRc9/LOC643714], rs3817198 [lymphocyte-speci... | DisGeNET | Detail |
| Six of the previously identified SNPs showed a statistically significant association with breast can... | DisGeNET | Detail |
| Among the premenopausal women, three SNPs (rs12443621 [TNRc9/LOC643714], rs3817198 [lymphocyte-speci... | DisGeNET | Detail |
| Six of the previously identified SNPs showed a statistically significant association with breast can... | DisGeNET | Detail |
| We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662, 2q35-rs13387042, M... | DisGeNET | Detail |
| We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662, 2q35-rs13387042, M... | DisGeNET | Detail |
| We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662, 2q35-rs13387042, M... | DisGeNET | Detail |
| We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662, 2q35-rs13387042, M... | DisGeNET | Detail |
| We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662, 2q35-rs13387042, M... | DisGeNET | Detail |
| We genotyped 17 germline SNPs (FGFR2-rs2981582, FGFR2-rs3750817, TNRC9-rs3803662, 2q35-rs13387042, M... | DisGeNET | Detail |
| Consistent with their breast cancer associations, rs3817198 (LSP1) and rs13281615 (8q) were associat... | DisGeNET | Detail |
| Consistent with their breast cancer associations, rs3817198 (LSP1) and rs13281615 (8q) were associat... | DisGeNET | Detail |
| Consistent with their breast cancer associations, rs3817198 (LSP1) and rs13281615 (8q) were associat... | DisGeNET | Detail |
| Consistent with their breast cancer associations, rs3817198 (LSP1) and rs13281615 (8q) were associat... | DisGeNET | Detail |
| Consistent with their breast cancer associations, rs3817198 (LSP1) and rs13281615 (8q) were associat... | DisGeNET | Detail |
| Consistent with their breast cancer associations, rs3817198 (LSP1) and rs13281615 (8q) were associat... | DisGeNET | Detail |
| Three SNPs (LSP1-rs3817198, COL1A1-rs2075555, and RNF146-rs2180341) did not show association with br... | DisGeNET | Detail |
| Three SNPs (LSP1-rs3817198, COL1A1-rs2075555, and RNF146-rs2180341) did not show association with br... | DisGeNET | Detail |
| Three SNPs (LSP1-rs3817198, COL1A1-rs2075555, and RNF146-rs2180341) did not show association with br... | DisGeNET | Detail |
| Three SNPs (LSP1-rs3817198, COL1A1-rs2075555, and RNF146-rs2180341) did not show association with br... | DisGeNET | Detail |
| Evidence of association with MD was found for variant rs3803662 (TOX3) (Odds Ratio (OR)=1.13, 95% Co... | DisGeNET | Detail |
| Evidence of association with MD was found for variant rs3803662 (TOX3) (Odds Ratio (OR)=1.13, 95% Co... | DisGeNET | Detail |
| In conclusion, we show that there is little overlap between the breast cancer risk single nucleotide... | DisGeNET | Detail |
| In conclusion, we show that there is little overlap between the breast cancer risk single nucleotide... | DisGeNET | Detail |
| In conclusion, we show that there is little overlap between the breast cancer risk single nucleotide... | DisGeNET | Detail |
| In conclusion, we show that there is little overlap between the breast cancer risk single nucleotide... | DisGeNET | Detail |
| Large-scale genotyping identifies 41 new loci associated with breast cancer risk. | DisGeNET | Detail |
| Our findings demonstrate a novel pleiotropic association between the breast cancer LSP1 risk region ... | DisGeNET | Detail |
| Our findings demonstrate a novel pleiotropic association between the breast cancer LSP1 risk region ... | DisGeNET | Detail |
| Our findings demonstrate a novel pleiotropic association between the breast cancer LSP1 risk region ... | DisGeNET | Detail |
| Large-scale genotyping identifies 41 new loci associated with breast cancer risk. | DisGeNET | Detail |
| There was significant association between LSP1 rs3817198T>C polymorphism and breast cancer risk i... | DisGeNET | Detail |
| Genome-wide association study identifies multiple loci associated with both mammographic density and... | DisGeNET | Detail |
| Association of a LSP1 gene rs3817198T>C polymorphism with breast cancer risk: evidence from 33,92... | DisGeNET | Detail |
| Our findings demonstrate a novel pleiotropic association between the breast cancer LSP1 risk region ... | DisGeNET | Detail |
| There was significant association between LSP1 rs3817198T>C polymorphism and breast cancer risk i... | DisGeNET | Detail |
| Association of a LSP1 gene rs3817198T>C polymorphism with breast cancer risk: evidence from 33,92... | DisGeNET | Detail |
| Genome-wide association study identifies multiple loci associated with both mammographic density and... | DisGeNET | Detail |
| There was significant association between LSP1 rs3817198T>C polymorphism and breast cancer risk i... | DisGeNET | Detail |
| Genome-wide association study identifies novel breast cancer susceptibility loci. | DisGeNET | Detail |
| There was significant association between LSP1 rs3817198T>C polymorphism and breast cancer risk i... | DisGeNET | Detail |
| Genome-wide association study identifies novel breast cancer susceptibility loci. | DisGeNET | Detail |
| Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... | DisGeNET | Detail |
| We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... | DisGeNET | Detail |
| We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... | DisGeNET | Detail |
| Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... | DisGeNET | Detail |
| Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... | DisGeNET | Detail |
| Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... | DisGeNET | Detail |
| Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... | DisGeNET | Detail |
| Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... | DisGeNET | Detail |
| Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... | DisGeNET | Detail |
| We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... | DisGeNET | Detail |
| We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... | DisGeNET | Detail |
| Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... | DisGeNET | Detail |
| We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... | DisGeNET | Detail |
| Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... | DisGeNET | Detail |
| We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... | DisGeNET | Detail |
| We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... | DisGeNET | Detail |
| Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... | DisGeNET | Detail |
| Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... | DisGeNET | Detail |
| We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... | DisGeNET | Detail |
| Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... | DisGeNET | Detail |
| We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... | DisGeNET | Detail |
| Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... | DisGeNET | Detail |
| Confirmed BC risk SNPs rs17468277 (CASP8), rs1982073 (TGFB1), rs2981582 (FGFR2), rs13281615 (8q24), ... | DisGeNET | Detail |
| We confirmed associations between rs13387042 (2q35), rs4973768 (SLC4A7), rs10941679 (5p12), rs298158... | DisGeNET | Detail |
| In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... | DisGeNET | Detail |
| In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... | DisGeNET | Detail |
| In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... | DisGeNET | Detail |
| In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... | DisGeNET | Detail |
| In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... | DisGeNET | Detail |
| In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... | DisGeNET | Detail |
| In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... | DisGeNET | Detail |
| In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... | DisGeNET | Detail |
| In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... | DisGeNET | Detail |
| In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... | DisGeNET | Detail |
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs3817198 dbSNP
- Genome
- hg38
- Position
- chr11:1,887,776-1,887,776
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- C
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs3817198
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.154
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 2580
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16758
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